species:   Artha
pid:       MI0017897
parent:    ath-MIR5027
paralog:   
locus:     5:10943902-10944062
matures:   ['ACCGGUUGGAACUUGCCUUAA', 'AAGCCAGGUUCAAACCGAUUU']
srr:       SRR9216050
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram 5:10943902-10944062

0 out of bounds
6 alignments
2 proper strand
2 stranded perfect matches

        ***********************                                                                                               ************************           
UCAAUUUAGAUAUGUGAGAAAACCGGUUGGAACUUGCCUUAACCAAGAAAAGCUACAAAAUAUUUUUUUUCUGACAAAAAAAAGAAAAAGAAAAUCGAUUUUGUGGUUUUCUUGGUUAAGCCAGGUUCAAACCGAUUUACAUGCAUGUGUUGGAUGUGUGA
...(((((((((((((.(.(((.(((((.(((((((.((((((((((((((.(((((((((.((((((((((..........)))))))))).....))))))))))))))))))))))).))))))).))))).))).).))))))).))))))......
---------------------ACCGGUUGGAACUUGCCUUAA----------------------------------------------------------------------------------------------------------------------- l=21 a=0 c
---------------------------------------------------------------------------------------------------------------------AAGCCAGGUUCAAACCGAUUU----------------------- l=21 a=0 c*
----------UAUGUGAGAAAACCGGUUGGA---------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 ma
--------------------------------------------------------------------------------------------------------------------------------AAACCGAUUUACAUGCAUGUGU----------- l=22 a=0 ma*

----------UAUGUGAGAAAACCGGUUGGA---------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 (ma)
-------------------------------------------------------------------------------------------------------------------------------------GAUUUACAUGCAUGUGUUGGAUGU---- l=24 a=1 

mb-01111
ax-1011011
ku-01
ss-110110011100
fn-001
